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If we look at religion beyond the caricatures and stereotypes of ignorance and intolerance, acknowledging that these are based on very vocal and visible religious institutions and individuals, then we can admit that these are part of what religion can become without assuming that this is the truest or most revealing part of what religion is. (We might also see that prophets and other religious figures were generally combating this tendency toward religious fanaticism, but again, let's leave that for your own investigation.)
We can look at the communally artistic way that religion or the religious aspects of culture deal with the most profound existential dilemmas facing our curiously sentient species and ask what value there may be in exploring these questions by weaving them into a shared tapestry of meaning and social affiliation.
We can speculate about the human (or at least the Western) tendency to organize our perception and behavior (and thus our explanations and cultural constructions) along an axis with freedom, ambiguity and uncertainty on one end and structure control and clarity on the other. Might this also apply to our notions of spirituality and religion when it comes to the aspects of our cultural systems that deal with major existential questions?
We can allow for the possibility that the questions and concerns driving nonbeliever and the irreligious are not so different from those who seek God or engage in religious activities. Or even that there may be a useful dialogue, if not a degree of synthesis, available to such seemingly divergent perspectives.
And still we can ask, how exactly does God fit into all of this?